Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7wtl
Q-score: 0.444
Cheng J, La Venuta G, Lau B, Berninghausen O, Beckmann R, Hurt E
Nucleic Acids Res (2022) 50 pp. 11916-11923 [ Pubmed: 36263816 DOI: doi:10.1093/nar/gkac910 ]
- U3 small nucleolar rna-associated protein mpp10 (67 kDa, Protein from baker's yeast)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Ribosome biogenesis protein bms1 (135 kDa, Protein from baker's yeast)
- Dimethyladenosine transferase (36 kDa, Protein from baker's yeast)
- 40s ribosomal protein s1-a (28 kDa, Protein from baker's yeast)
- 40s ribosomal protein s7-a (21 kDa, Protein from baker's yeast)
- 40s ribosomal protein s14-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from baker's yeast)
- Something about silencing protein 10 (70 kDa, Protein from baker's yeast)
- 40s ribosomal protein s6-a (27 kDa, Protein from baker's yeast)
- 40s ribosomal protein s23-a (16 kDa, Protein from baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from baker's yeast)
- 18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s9-a (22 kDa, Protein from baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s8-a (22 kDa, Protein from baker's yeast)
- 40s ribosomal protein s13 (17 kDa, Protein from baker's yeast)
- Pre-rrna-processing protein pno1 (30 kDa, Protein from baker's yeast)
- Yeast pre-40s ribosomal subunit (Complex from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s11-a (17 kDa, Protein from baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from baker's yeast)
- Magnesium ion (24 Da, Ligand)
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7wtm
Q-score: 0.451
Cheng J, La Venuta G, Lau B, Berninghausen O, Beckmann R, Hurt E
Nucleic Acids Res (2022) 50 pp. 11916-11923 [ Pubmed: 36263816 DOI: doi:10.1093/nar/gkac910 ]
- 40s ribosomal protein s30-a (7 kDa, Protein from baker's yeast)
- Dimethyladenosine transferase (36 kDa, Protein from baker's yeast)
- 40s ribosomal protein s1-a (28 kDa, Protein from baker's yeast)
- 40s ribosomal protein s7-a (21 kDa, Protein from baker's yeast)
- 40s ribosomal protein s14-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from baker's yeast)
- 40s ribosomal protein s6-a (27 kDa, Protein from baker's yeast)
- 40s ribosomal protein s23-a (16 kDa, Protein from baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from baker's yeast)
- 18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s9-a (22 kDa, Protein from baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s8-a (22 kDa, Protein from baker's yeast)
- 40s ribosomal protein s13 (17 kDa, Protein from baker's yeast)
- Pre-rrna-processing protein pno1 (30 kDa, Protein from baker's yeast)
- Yeast pre-40s ribosomal subunit (Complex from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s11-a (17 kDa, Protein from baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from baker's yeast)
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7wtn
Q-score: 0.47
Cheng J, Lau B, Thoms M, Ameismeier M, Berninghausen O, Hurt E, Beckmann R
Nucleic Acids Res (2022) 50 pp. 11924-11937 [ Pubmed: 36321656 DOI: doi:10.1093/nar/gkac961 ]
- 40s ribosomal protein s30-a (7 kDa, Protein from baker's yeast)
- 18s rrna (guanine(1575)-n(7))-methyltransferase (30 kDa, Protein from baker's yeast)
- 40s ribosomal protein s2 (27 kDa, Protein from baker's yeast)
- 40s ribosomal protein s1-a (28 kDa, Protein from baker's yeast)
- 40s ribosomal protein s7-a (21 kDa, Protein from baker's yeast)
- 40s ribosomal protein s14-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from baker's yeast)
- 40s ribosomal protein s6-a (27 kDa, Protein from baker's yeast)
- 40s ribosomal protein s23-a (16 kDa, Protein from baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from baker's yeast)
- 18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s9-a (22 kDa, Protein from baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s8-a (22 kDa, Protein from baker's yeast)
- 40s ribosomal protein s13 (17 kDa, Protein from baker's yeast)
- Pre-rrna-processing protein pno1 (30 kDa, Protein from baker's yeast)
- Yeast pre-40s ribosomal subunit (Complex from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s11-a (17 kDa, Protein from baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from baker's yeast)
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7wto
Q-score: 0.457
Cheng J, Lau B, Thoms M, Ameismeier M, Berninghausen O, Hurt E, Beckmann R
Nucleic Acids Res (2022) 50 pp. 11924-11937 [ Pubmed: 36321656 DOI: doi:10.1093/nar/gkac961 ]
- 18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s4-a (29 kDa, Protein from baker's yeast)
- 40s ribosomal protein s30-a (7 kDa, Protein from baker's yeast)
- 40s ribosomal protein s6-a (27 kDa, Protein from baker's yeast)
- 40s ribosomal protein s9-a (22 kDa, Protein from baker's yeast)
- 40s ribosomal protein s14-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s8-a (22 kDa, Protein from baker's yeast)
- Pre-rrna-processing protein pno1 (30 kDa, Protein from baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from baker's yeast)
- 40s ribosomal protein s23-a (16 kDa, Protein from baker's yeast)
- Yeast pre-40s ribosomal subunit (Complex from Homo sapiens)
- 40s ribosomal protein s1-a (28 kDa, Protein from baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from baker's yeast)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s7-a (21 kDa, Protein from baker's yeast)
- 40s ribosomal protein s11-a (17 kDa, Protein from baker's yeast)
- 40s ribosomal protein s13 (17 kDa, Protein from baker's yeast)
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7wtp
Q-score: 0.399
Cheng J, Lau B, Thoms M, Ameismeier M, Berninghausen O, Hurt E, Beckmann R
Nucleic Acids Res (2022) 50 pp. 11924-11937 [ Pubmed: 36321656 DOI: doi:10.1093/nar/gkac961 ]
- 40s ribosomal protein s30-a (7 kDa, Protein from baker's yeast)
- 18s rrna (guanine(1575)-n(7))-methyltransferase (30 kDa, Protein from baker's yeast)
- 40s ribosomal protein s2 (27 kDa, Protein from baker's yeast)
- 40s ribosomal protein s1-a (28 kDa, Protein from baker's yeast)
- 40s ribosomal protein s7-a (21 kDa, Protein from baker's yeast)
- 40s ribosomal protein s14-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from baker's yeast)
- Ribosome biogenesis protein tsr1 (90 kDa, Protein from baker's yeast)
- 40s ribosomal protein s6-a (27 kDa, Protein from baker's yeast)
- 40s ribosomal protein s23-a (16 kDa, Protein from baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from baker's yeast)
- 18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s9-a (22 kDa, Protein from baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s8-a (22 kDa, Protein from baker's yeast)
- 40s ribosomal protein s13 (17 kDa, Protein from baker's yeast)
- Pre-rrna-processing protein pno1 (30 kDa, Protein from baker's yeast)
- Yeast pre-40s ribosomal subunit (Complex from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s11-a (17 kDa, Protein from baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from baker's yeast)
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7wtq
Q-score: 0.382
Cheng J, Lau B, Thoms M, Ameismeier M, Berninghausen O, Hurt E, Beckmann R
Nucleic Acids Res (2022) 50 pp. 11924-11937 [ Pubmed: 36321656 DOI: doi:10.1093/nar/gkac961 ]
- 40s ribosomal protein s30-a (7 kDa, Protein from baker's yeast)
- 18s rrna (guanine(1575)-n(7))-methyltransferase (30 kDa, Protein from baker's yeast)
- 40s ribosomal protein s1-a (28 kDa, Protein from baker's yeast)
- 40s ribosomal protein s7-a (21 kDa, Protein from baker's yeast)
- 40s ribosomal protein s14-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from baker's yeast)
- Ribosome biogenesis protein tsr1 (90 kDa, Protein from baker's yeast)
- 40s ribosomal protein s6-a (27 kDa, Protein from baker's yeast)
- 40s ribosomal protein s23-a (16 kDa, Protein from baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from baker's yeast)
- 18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s9-a (22 kDa, Protein from baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s8-a (22 kDa, Protein from baker's yeast)
- 40s ribosomal protein s13 (17 kDa, Protein from baker's yeast)
- Pre-rrna-processing protein pno1 (30 kDa, Protein from baker's yeast)
- Yeast pre-40s ribosomal subunit (Complex from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s11-a (17 kDa, Protein from baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from baker's yeast)
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7wtr
Q-score: 0.435
Cheng J, Lau B, Thoms M, Ameismeier M, Berninghausen O, Hurt E, Beckmann R
Nucleic Acids Res (2022) 50 pp. 11924-11937 [ Pubmed: 36321656 DOI: doi:10.1093/nar/gkac961 ]
- 40s ribosomal protein s30-a (7 kDa, Protein from baker's yeast)
- 18s rrna (guanine(1575)-n(7))-methyltransferase (30 kDa, Protein from baker's yeast)
- 40s ribosomal protein s2 (27 kDa, Protein from baker's yeast)
- 40s ribosomal protein s1-a (28 kDa, Protein from baker's yeast)
- 40s ribosomal protein s7-a (21 kDa, Protein from baker's yeast)
- 40s ribosomal protein s14-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from baker's yeast)
- Ribosome biogenesis protein tsr1 (90 kDa, Protein from baker's yeast)
- 40s ribosomal protein s6-a (27 kDa, Protein from baker's yeast)
- 40s ribosomal protein s23-a (16 kDa, Protein from baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from baker's yeast)
- 18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s9-a (22 kDa, Protein from baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s8-a (22 kDa, Protein from baker's yeast)
- 40s ribosomal protein s13 (17 kDa, Protein from baker's yeast)
- Pre-rrna-processing protein pno1 (30 kDa, Protein from baker's yeast)
- Yeast pre-40s ribosomal subunit (Complex from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s11-a (17 kDa, Protein from baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from baker's yeast)
Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7wtt
Q-score: 0.426
Cheng J, Lau B, Thoms M, Ameismeier M, Berninghausen O, Hurt E, Beckmann R
Nucleic Acids Res (2022) 50 pp. 11924-11937 [ Pubmed: 36321656 DOI: doi:10.1093/nar/gkac961 ]
- Ribosome biogenesis protein slx9 homolog (25 kDa, Protein from human)
- 40s ribosomal protein s14 (16 kDa, Protein from human)
- 40s ribosomal protein s24 (15 kDa, Protein from human)
- 40s ribosomal protein s3a (30 kDa, Protein from human)
- Probable 18s rrna (guanine-n(7))-methyltransferase (31 kDa, Protein from human)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from human)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s28 (7 kDa, Protein from human)
- 40s ribosomal protein s30 (6 kDa, Protein from human)
- 40s ribosomal protein s18 (17 kDa, Protein from human)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from human)
- 40s ribosomal protein s5 (22 kDa, Protein from human)
- 40s ribosomal protein s12 (14 kDa, Protein from human)
- Multifunctional methyltransferase subunit trm112-like protein (14 kDa, Protein from human)
- 40s ribosomal protein s6 (28 kDa, Protein from human)
- Casein kinase i isoform alpha (38 kDa, Protein from human)
- Rna-binding protein pno1 (27 kDa, Protein from human)
- 40s ribosomal protein s15a (14 kDa, Protein from human)
- 40s ribosomal protein s9 (22 kDa, Protein from human)
- Protein ltv1 homolog (54 kDa, Protein from human)
- 40s ribosomal protein s13 (17 kDa, Protein from human)
- 40s ribosomal protein s19 (16 kDa, Protein from human)
- 40s ribosomal protein s7 (22 kDa, Protein from human)
- 18s rrna (604 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from human)
- 40s ribosomal protein s17 (15 kDa, Protein from human)
- Rrp12-like protein (143 kDa, Protein from human)
- Pre-rrna-processing protein tsr1 homolog (91 kDa, Protein from human)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- 40s ribosomal protein s23 (15 kDa, Protein from human)
- 40s ribosomal protein s15 (17 kDa, Protein from human)
- Yeast pre-40s ribosomal subunit (Complex from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from human)
- 40s ribosomal protein s16 (16 kDa, Protein from human)
- Bystin (49 kDa, Protein from human)
- 40s ribosomal protein s27 (9 kDa, Protein from human)
- 40s ribosomal protein s11 (18 kDa, Protein from human)
Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7ajt
Q-score: 0.308
Lau B, Cheng J, Flemming D, La Venuta G, Berninghausen O, Beckmann R, Hurt E
Mol Cell (2021) 81 pp. 293- [ DOI: doi:10.1016/j.molcel.2020.11.009 Pubmed: 33326748 ]
- U3 small nucleolar rna-associated protein 21 (104 kDa, Protein from Baker's yeast)
- Rrna biogenesis protein rrp5 (193 kDa, Protein from Baker's yeast)
- Regulator of rdna transcription protein 14 (23 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 15 (57 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from Baker's yeast)
- Protein bfr2 (61 kDa, Protein from Baker's yeast)
- Exosome complex component rrp43 (44 kDa, Protein from Baker's yeast)
- Ribosomal rna small subunit methyltransferase nep1 (27 kDa, Protein from Baker's yeast)
- Atp-dependent rna helicase dob1 (122 kDa, Protein from Baker's yeast)
- Pre-rrna-processing protein pno1 (30 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s28-a (7 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from Baker's yeast)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- 40s ribosomal protein s5 (25 kDa, Protein from Baker's yeast)
- Net1-associated nuclear protein 1 (101 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 4 (87 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s16-a (15 kDa, Protein from Baker's yeast)
- Exosome complex exonuclease dis3 (113 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s8-a (22 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s9-a (22 kDa, Protein from Baker's yeast)
- Exosome complex component ski6 (27 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 13 (91 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s1-a (28 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 8 (80 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s11-a (17 kDa, Protein from Baker's yeast)
- Exosome complex component csl4 (31 kDa, Protein from Baker's yeast)
- U3 snorna (106 kDa, RNA from Saccharomyces cerevisiae S288C)
- Rna (6 kDa, RNA from Saccharomyces cerevisiae S288C)
- Exosome complex component rrp4 (39 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s14-a (14 kDa, Protein from Baker's yeast)
- Ribosomal rna-processing protein 9 (65 kDa, Protein from Baker's yeast)
- Exosome complex component mtr3 (27 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 5 (72 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 7 (62 kDa, Protein from Baker's yeast)
- 13 kda ribonucleoprotein-associated protein (13 kDa, Protein from Baker's yeast)
- Nucleolar protein 56 (56 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 9 (65 kDa, Protein from Baker's yeast)
- Nucleolar protein 58 (57 kDa, Protein from Baker's yeast)
- Exosome complex component rrp42 (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Exosome complex component rrp45 (34 kDa, Protein from Baker's yeast)
- Something about silencing protein 10 (70 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s18-a (17 kDa, Protein from Baker's yeast)
- Exosome complex component rrp46 (24 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 18 (66 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s7-a (21 kDa, Protein from Baker's yeast)
- 90s-exosome super-complex in state pre-a1-exosome (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rrna-processing protein fcf2 (25 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 11 (29 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 6 (52 kDa, Protein from Baker's yeast)
- Periodic tryptophan protein 2 (104 kDa, Protein from Baker's yeast)
- Rrna 2'-o-methyltransferase fibrillarin (34 kDa, Protein from Baker's yeast)
- 5'ets rna (225 kDa, RNA from Saccharomyces cerevisiae S288C)
- 18s rrna (582 kDa, RNA from Saccharomyces cerevisiae S288C)
- Nucleolar complex protein 14 (94 kDa, Protein from Baker's yeast)
- Rrna-processing protein fcf1 (21 kDa, Protein from Baker's yeast)
- Essential nuclear protein 1 (55 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein utp30 (31 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein bms1 (135 kDa, Protein from Baker's yeast)
- U3 small nucleolar ribonucleoprotein protein imp4 (33 kDa, Protein from Baker's yeast)
- Protein faf1 (38 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s13 (17 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein enp2 (81 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s23-a (16 kDa, Protein from Baker's yeast)
- U3 small nucleolar ribonucleoprotein protein imp3 (21 kDa, Protein from Baker's yeast)
- Nucleolar complex protein 4 (63 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from Baker's yeast)
- Bud site selection protein 21 (24 kDa, Protein from Baker's yeast)
- Exosome complex component rrp40 (26 kDa, Protein from Baker's yeast)
- Krr1 small subunit processome component (37 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein mpp10 (67 kDa, Protein from Baker's yeast)
- Protein sof1 (56 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 10 (200 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 20 (287 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 22 (140 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 14 (103 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s6-a (27 kDa, Protein from Baker's yeast)
- Rna 3'-terminal phosphate cyclase-like protein (40 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 12 (106 kDa, Protein from Baker's yeast)
- Rna cytidine acetyltransferase (119 kDa, Protein from Baker's yeast)
- Ribosomal rna-processing protein 7 (34 kDa, Protein from Baker's yeast)
- Magnesium ion (24 Da, Ligand)
Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7aju
Q-score: 0.366
Lau B, Cheng J, Flemming D, La Venuta G, Berninghausen O, Beckmann R, Hurt E
Mol Cell (2021) 81 pp. 293- [ Pubmed: 33326748 DOI: doi:10.1016/j.molcel.2020.11.009 ]
- 40s ribosomal protein s13 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Exosome complex component mtr3 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 7 (62 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s28-a (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribosomal rna-processing protein 7 (34 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rrna-processing protein fcf1 (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nucleolar protein 58 (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Exosome complex component rrp46 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nucleolar protein 56 (56 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 8 (80 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 10 (200 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 11 (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Protein sof1 (56 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 14 (103 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 snorna (106 kDa, RNA from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s23-a (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 18 (66 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rrna-processing protein fcf2 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Bud site selection protein 21 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Exosome complex component rrp42 (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Magnesium ion (24 Da, Ligand)
- Exosome complex component csl4 (31 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna (6 kDa, RNA from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s18-a (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Pre-rrna-processing protein pno1 (30 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dimethyladenosine transferase (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Net1-associated nuclear protein 1 (101 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s22-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Something about silencing protein 10 (70 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s14-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribosome biogenesis protein bms1 (135 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 5'ets rna (26 kDa, RNA from Saccharomyces cerevisiae S288C)
- 18s rrna (580 kDa, RNA from Saccharomyces cerevisiae S288C)
- U3 small nucleolar rna-associated protein 20 (287 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 13 kda ribonucleoprotein-associated protein (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 21 (104 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nucleolar complex protein 4 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s6-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Essential nuclear protein 1 (55 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s9-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 12 (106 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp-dependent rna helicase dob1 (122 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna 3'-terminal phosphate cyclase-like protein (40 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rrna 2'-o-methyltransferase fibrillarin (34 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rrna biogenesis protein rrp5 (193 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribosomal rna-processing protein 9 (65 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nucleolar complex protein 14 (94 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Exosome complex exonuclease dis3 (113 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s5 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar ribonucleoprotein protein imp3 (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Exosome complex component rrp45 (34 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar ribonucleoprotein protein imp4 (33 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 15 (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribosomal rna small subunit methyltransferase nep1 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 9 (65 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s1-a (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Probable atp-dependent rna helicase dhr1 (145 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Exosome complex component rrp4 (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 90s-exosome super-complex in state post-a1-exosome (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Exosome complex component rrp40 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 4 (87 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 13 (91 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Exosome complex component rrp43 (44 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 6 (52 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 5 (72 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Exosome complex component ski6 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Periodic tryptophan protein 2 (104 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein mpp10 (67 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 22 (140 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))